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1606 Commity (0.10.0)

Autor SHA1 Wiadomość Data
Tim Head 69c09aeca2
Prepare release of 0.10.0 (#759) 
Prepare release of 0.10.0
 2019-08-07 09:25:47 +02:00
Tim Head 7e4b1bd34d Update Changelog 2019-08-07 09:19:55 +02:00
Tim Head d72c60182a
Merge pull request #728 from scottyhq/nopip 
[MRG] switch pip packages to conda-forge in conda buildpack
 2019-08-05 10:21:14 +02:00
Tim Head e012bb39fb
[MRG] Rewrite tests in test_semver.py #615 (#757) 
[MRG] Rewrite tests in test_semver.py #615
 2019-08-02 18:12:35 +02:00
Samnan Rahee 6efe82b9b7 rewrite /test/units/test_semver.py using @pytest.mark.parametrize fixes #615 2019-08-02 15:08:43 +06:00
Scott Henderson cfaa552cb4 node test for system package and conda-forge 2019-07-31 22:52:24 +00:00
Scott Henderson 5ea4c29b83 bump conda minor version to 4.7.10 and refreeze 2019-07-29 17:30:50 +00:00
Scott Henderson 955e422101 clarify application of environment.yml 2019-07-29 17:23:09 +00:00
Scott Henderson 62e10d6891 switched pip packages to conda-forge 2019-07-29 17:23:09 +00:00
Chris Holdgraf bf29f66f27
Merge pull request #752 from betatim/fix-preassemble-r-py-combo 
[MRG] Call parent preassemble scripts methods
 2019-07-23 13:15:52 -07:00
Tim Head e24e5d91ca Add test for R buildpack's get_preassemble_script_files 2019-07-23 18:23:30 +02:00
Tim Head 01c785f6fc Call parent preassemble scripts methods 
Without this we don't collect the files that other build packs need to
copy them over to the container in the pre-assemble stage.
 2019-07-23 07:33:06 +02:00
Tim Head 6c5c09b62b
Merge pull request #743 from minrk/conda-env-first-again-again 
[MRG] preassembly for conda/python
 2019-07-19 10:36:15 +02:00
Min RK 930e907ac6
Update repo2docker/buildpacks/conda/__init__.py 
Co-Authored-By: Tim Head <betatim@gmail.com>
 2019-07-19 08:56:06 +02:00
Tim Head 74af2ad83c
Merge pull request #748 from minrk/pipfile-toml 
parse pipfiles to determine Python version
 2019-07-18 21:48:35 +02:00
Tim Head 1774f8c68b
Merge pull request #746 from minrk/typo 
typo in doi regexp
 2019-07-18 21:38:57 +02:00
Min RK 31da8e32b1 run chown as root 2019-07-18 17:55:38 +02:00
Min RK 8236dc8ae1 only install pipenv in preassemble 
save preassembly of pipenv for a later patch
 2019-07-18 16:25:04 +02:00
Min RK 79c2617873 parse pipfiles to determine Python version 
these are structured files, no need to use regular expressions to parse them
 2019-07-18 16:13:41 +02:00
Min RK dd6cd93585 typo in doi regexp 
must use `r` prefix when there are escapes
 2019-07-18 14:41:01 +02:00
Min RK 009d09815a test local pip requirements 2019-07-18 14:40:17 +02:00
Min RK 654be046ac set permissions on repo_dir prior to preassemble 2019-07-18 14:40:08 +02:00
Min RK 3da5543bfc check for local pip requirements in conda environments 2019-07-18 14:39:35 +02:00
Tim Head 88eaa2305a
refreeze 2019-07-16 (#745) 
refreeze 2019-07-16
 2019-07-16 18:57:10 +02:00
Min RK 4f3f192d2f preassembly for pipfiles 2019-07-16 15:52:39 +02:00
Min RK d6e66c886d preassemble python 2019-07-16 15:52:39 +02:00
Min RK ddfd3f3464 refreeze 2019-07-16 2019-07-16 15:23:00 +02:00
Min RK 70878082f6 conda install occurs in preassemble 2019-07-16 09:02:35 +02:00
Min RK 5b12e072b1 move stencila to preassemble 2019-07-16 08:35:35 +02:00
Min RK b6ab2a9986 check requirements.txt for local references 
allows assemble_from_subset when requirements.txt doesn't contain any local references
 2019-07-16 07:56:11 +02:00
Min RK 5cf4f786e8 add assemble_subset 
- get_assemble_files() returns list of files needed for assembly
- if buildpack.assemble_with_subset is set, only load assemble_files
  prior to running assembly scripts. Load the rest of the repo afterward

conda opts in to this, but currently I think this works
for everything *except* requirements.txt
 2019-07-16 07:55:52 +02:00
Min RK 5ef42fc2af
Merge pull request #718 from betatim/early-r 
[MRG] Install R packages before copying repo contents
 2019-07-16 07:30:16 +02:00
David R. Pugh 399b339a4a [WIP] Version bump Conda from 4.6.14 to 4.7.5 (#719) 
Version bump conda to 4.7.5

Co-authored-by: pughdr <david.pugh@kaust.edu.sa>
 2019-07-12 18:50:11 +02:00
Tim Head 09b84811ae Make sure all loops over dict items are deterministic 2019-07-12 07:23:41 +02:00
Tim Head fbe3503320
Merge pull request #738 from eexwhyzee/add-bash-to-dockerfile 
[MRG] Adding bash to Dockerfile to fix git-credential-env
 2019-07-11 08:06:52 +02:00
Minh Hoang 9c29cc022d Missing punctuation 2019-07-10 09:57:12 -07:00
Minh Hoang ac952c157e Update changelog 2019-07-10 09:56:00 -07:00
Minh Hoang a0715be50f Adding bash to Dockerfile to fix git-credential-env 2019-07-10 09:43:29 -07:00
Tim Head b16b610192
bump xeus-cling in tests (#735) 
bump xeus-cling in tests
 2019-07-09 17:50:24 +02:00
Min RK bbe2b961ad bump xeus-cling in tests 
so we don't have an old env relying on the free channel
 2019-07-09 16:12:22 +02:00
Min RK 0d8b8a2ebf
Merge pull request #732 from betatim/fix-zenodo-ci-example 
[MRG] Switch to binder-examples/requirements for our tests
 2019-07-09 10:25:39 +02:00
Tim Head 66227f85b4 Detect failure of pre-assembly in R buildpack 
If the pre-assembly step succeeds we do not re-run it after copying the
repository contents.
 2019-07-06 16:21:29 +02:00
Tim Head b5a506e0b7 Switch to binder-examples/requirements for our tests 2019-07-06 15:30:21 +02:00
Min RK a251ad261c
Merge pull request #730 from betatim/remove-print-statements 
[MRG] Remove print statement and unused import
 2019-07-04 12:13:09 +02:00
Tim Head dd8ba8ec18 Remove print statement and unused import 2019-07-03 06:53:59 +02:00
Tim Head 0eae8dc0c4 Install R packages before copying repo contents 2019-06-28 22:09:32 +02:00
Tim Head 4b0e838136
[MRG] Handle root user case more gracefully. Fixes #696 (#723) 
[MRG] Handle root user case more gracefully. Fixes #696
 2019-06-28 22:07:32 +02:00
Kacper Kowalik (Xarthisius) f80fb4b39b
Handle root user case more gracefully. Fixes #696 
If user_id is root, exit only from cmdline. Raise exception if r2d was
invoked as a library.
 2019-06-28 11:46:01 -05:00
Tim Head 2cded9b4ec
Update target_repo_dir docstring (#721) 
Update target_repo_dir docstring
 2019-06-27 12:44:42 +02:00
Fabien Maussion 85b0d80b16
Update target_repo_dir docstring 
See https://discourse.jupyter.org/t/users-home-in-jupyterhub/1463/3
 2019-06-27 08:58:29 +01:00