OpenDroneMap-ODM/contrib/orthorectify/orthorectify.py

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Python

#!/usr/bin/env python3
# Author: Piero Toffanin
# License: AGPLv3
import os
import sys
sys.path.insert(0, os.path.join("..", "..", os.path.dirname(__file__)))
import rasterio
import numpy as np
from opensfm import dataset
import multiprocessing
# TODO: command argument parser
dataset_path = "/datasets/brighton2"
dem_path = "/datasets/brighton2/odm_meshing/tmp/mesh_dsm.tif"
interpolation = 'linear' # 'bilinear'
with_alpha = True
target_images = [] # all
target_images.append("DJI_0030.JPG")
def bilinear_interpolate(im, x, y):
x = np.asarray(x)
y = np.asarray(y)
x0 = np.floor(x).astype(int)
x1 = x0 + 1
y0 = np.floor(y).astype(int)
y1 = y0 + 1
x0 = np.clip(x0, 0, im.shape[1]-1)
x1 = np.clip(x1, 0, im.shape[1]-1)
y0 = np.clip(y0, 0, im.shape[0]-1)
y1 = np.clip(y1, 0, im.shape[0]-1)
Ia = im[ y0, x0 ]
Ib = im[ y1, x0 ]
Ic = im[ y0, x1 ]
Id = im[ y1, x1 ]
wa = (x1-x) * (y1-y)
wb = (x1-x) * (y-y0)
wc = (x-x0) * (y1-y)
wd = (x-x0) * (y-y0)
return wa*Ia + wb*Ib + wc*Ic + wd*Id
# Read DSM
print("Reading DSM: %s" % dem_path)
with rasterio.open(dem_path) as dem_raster:
dem = dem_raster.read()[0]
h, w = dem.shape
print("DSM dimensions: %sx%s pixels" % (w, h))
# Read reconstruction
udata = dataset.UndistortedDataSet(dataset.DataSet(os.path.join(dataset_path, "opensfm")))
reconstructions = udata.load_undistorted_reconstruction()
if len(reconstructions) == 0:
raise Exception("No reconstructions available")
max_workers = multiprocessing.cpu_count()
print("Using %s threads" % max_workers)
reconstruction = reconstructions[0]
for shot in reconstruction.shots.values():
if len(target_images) == 0 or shot.id in target_images:
print("Processing %s..." % shot.id)
shot_image = udata.load_undistorted_image(shot.id)
r = shot.pose.get_rotation_matrix().T
Xs, Ys, Zs = shot.pose.get_origin()
print("Camera pose: (%f, %f, %f)" % (Xs, Ys, Zs))
img_h, img_w, num_bands = shot_image.shape
print("Image dimensions: %sx%s pixels" % (img_w, img_h))
f = shot.camera.focal * max(img_h, img_w)
def process_pixels(step):
imgout = np.full((num_bands, h, w), np.nan)
minx = w
miny = h
maxx = 0
maxy = 0
for j in range(h):
if j % max_workers == step:
for i in range(w):
# World coordinates
Xa, Ya = dem_raster.xy(j, i)
Za = dem[j][i]
# Colinearity function http://web.pdx.edu/~jduh/courses/geog493f14/Week03.pdf
dx = (Xa - Xs)
dy = (Ya - Ys)
dz = (Za - Zs)
den = r[0][2] * dx + r[1][2] * dy + r[2][2] * dz
x = (img_w - 1) / 2.0 - (f * (r[0][0] * dx + r[1][0] * dy + r[2][0] * dz) / den)
y = (img_h - 1) / 2.0 - (f * (r[0][1] * dx + r[1][1] * dy + r[2][1] * dz) / den)
if x >= 0 and y >= 0 and x <= img_w - 1 and y <= img_h - 1:
# for b in range(num_bands):
if interpolation == 'bilinear':
xi = img_w - 1 - x
yi = img_h - 1 - y
values = bilinear_interpolate(shot_image, xi, yi)
else:
# Linear
xi = img_w - 1 - int(round(x))
yi = img_h - 1 - int(round(y))
values = shot_image[yi][xi]
# We don't consider all zero values (pure black)
# to be valid sample values. This will sometimes miss
# valid sample values.
if not np.all(values == 0):
minx = min(minx, i)
miny = min(miny, j)
maxx = max(maxx, i)
maxy = max(maxy, j)
for b in range(num_bands):
imgout[b][j][i] = values[b]
# for b in range(num_bands):
# imgout[b][j][i] = 255
return (imgout, (minx, miny, maxx, maxy))
with multiprocessing.Pool(max_workers) as p:
results = p.map(process_pixels, range(max_workers))
# Merge image
imgout, _ = results[0]
for j in range(h):
resimg, _ = results[j % max_workers]
for b in range(num_bands):
imgout[b][j] = resimg[b][j]
# Merge bounds
minx = w
miny = h
maxx = 0
maxy = 0
for _, bounds in results:
minx = min(bounds[0], minx)
miny = min(bounds[1], miny)
maxx = max(bounds[2], maxx)
maxy = max(bounds[3], maxy)
print("Output bounds: (%s, %s), (%s, %s) pixels" % (minx, miny, maxx, maxy))
if minx <= maxx and miny <= maxy:
imgout = imgout[:,miny:maxy,minx:maxx]
if with_alpha:
alpha = np.zeros((imgout.shape[1], imgout.shape[2]), dtype=np.uint8)
# Set all not-NaN indices to 255
alpha[~np.isnan(imgout[0])] = 255
# Cast
imgout = imgout.astype(shot_image.dtype)
profile = {
'driver': 'GTiff',
'width': imgout.shape[2],
'height': imgout.shape[1],
'count': num_bands + 1 if with_alpha else num_bands,
'dtype': imgout.dtype.name,
'nodata': None
}
with rasterio.open("/datasets/brighton2/odm_meshing/tmp/out.tif", 'w', **profile) as wout:
for b in range(num_bands):
wout.write(imgout[b], b + 1)
if with_alpha:
wout.write(alpha, num_bands + 1)
else:
print("Cannot orthorectify image (is the image inside the DSM bounds?)")